PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029779.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 293aa    MW: 31615.7 Da    PI: 5.3886
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029779.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09186230655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 n + ++RR+ri +++  L+el+P+      +K++ +++L kA+ Y+k +q
  Do029779.1 186 NLAAKNRRERITERLRVLQELVPNG-----GKVDTVTMLDKAITYVKFMQ 230
                 7888*******************98.....8****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.697180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-12181238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-14182242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.07E-12182234No hitNo description
SMARTSM003532.7E-12186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6186230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MALVRDPTPP LYYDGAFIDV NHTGVEYQKL HYPQQLLEEC MIGSHPWDLE LPMDGGLGSS  60
SAFAQDGGFA NMVGVSSSPS SSVVTFDGHG EEYCAAWMDM DDTDQLSYGL VTGHAAASSV  120
ASNCFGVDSG RKNVAPAAAR QKRPRALAPP QGTQEEAVAA PKQCGGNRRA ATKPNKVPAA  180
PKDPQNLAAK NRRERITERL RVLQELVPNG GKVDTVTMLD KAITYVKFMQ LQLKVLETDA  240
FWPTPGGEAP KMSQVKEALD AILLSTAFSS QRDSQIELAA TNASMEWTNR PCC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660552.13e-49PREDICTED: uncharacterized protein LOC101767899
SwissprotQ9FJ001e-42BH086_ARATH; Putative transcription factor bHLH086
TrEMBLM0VV318e-74M0VV31_HORVD; Uncharacterized protein
STRINGMLOC_37511.22e-73(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-43ROOT HAIR DEFECTIVE6